Breakfast Keto Egg Muffins – Perfect Macros & Low in Carbs

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These breakfast keto egg muffins are perfect to go option for busy mornings. Egg muffins are a quick and delicious breakfast choice, loaded with bacon, cheese, and vegetables. Enjoy a packed with protein low carb breakfast!

texture keto breakfast bacon egg muffin

Mix some eggs, bacon, and veggies of choice. Season with your favorite spices bake and voilà you have amazing breakfast muffins that you can actually eat at every moment of the day.

Eat them for breakfast with some butter on top, take them for lunch at school or at work. Serve them for dinner with a large leafy green salad. Also perfect for a quick snack. I love to drizzle some spicy jalapeno sauce on top.

The muffins contain the perfect keto ratio of macros, are super low carb, high in fat, and provide high-quality moderate protein amount.

To prepare the basic keto muffin recipe, you will need some eggs.

Ingredients for the Keto Egg Muffins:

  • Eggs – The best choice is pastured eggs from a local farmer.
  • Bacon – Uncured bacon that has no sugar or nitrites added.
  • Cheese – There are no restrictions when it comes to cheese but stay away from pre-shredded cheese because it contains starches that make cheese high in carbs.
  • Green onion. You can use any low carb vegetables you like.
  • Seasonings to taste
eggs bacon keto breakfast bacon egg muffin

How to Make Egg Muffins?

Start by cracking the eggs into a bowl, then add salt and your favorite spices. I added smoked paprika and pepper.

add spices bacon keto breakfast bacon egg muffin

I whisked the eggs well and then took care of my bacon.

beat the eggs bacon keto breakfast bacon egg muffin

For this recipe, I used uncured bacon. I sliced it and cooked it in a pan until it gets a nice brown color. Bacon makes everything better.

bacon keto breakfast bacon egg muffin

cook bacon bacon keto breakfast bacon egg muffin

As green onions are in season, I decided to use a few of them to give a fresher look and taste to my keto muffins. You can customize this recipe and add any vegetables you have on hand. I love to make the muffins with red bell pepper cubes or with fresh spinach leaves. It’s the perfect way to incorporate more veggies into your diet if you’re not a huge fan of them.

green onion bacon keto breakfast bacon egg muffin

Incorporate the bacon and egg into the egg mixture. As you can see, my eggs have a nice yellow colour which it’s a sign that they are higher in omega-3 fatty acids, have more vitamins due to a more natural hen’s feed.

add bacon and onion bacon keto breakfast bacon egg muffin

Pour the combined ingredients equally (or at least try) in the muffin tray.

add the mixture bacon keto breakfast bacon egg muffin

Sprinkle some Parmesan cheese and grated Emmentaler on top of each muffin. These are great with cheddar cheese too. I love that they are very customizable and nutrient dense. That’s what we need for a great start of the day.

add chese bacon keto breakfast bacon egg muffin
bake bacon keto breakfast bacon egg muffin

I baked them in the preheated oven for 25-30 minutes until they were done in the preheated oven.`

keto breakfast bacon egg muffin from the oven

Let them cool down and serve with grass-fed butter on top.

Tips for the Keto Egg Muffins

  1. This recipe can easily be adapted to feed a larger crowd. Just double or triple the recipes!
  2. I like to use other fresh vegetables such as spinach, tiny pieces of broccoli, slices of mushrooms, or tomatoes.
  3. Make sure to grease your muffin tins properly so that your egg muffins don’t stick to the bottom of the pan or use a high-quality non-stick muffin tray. To prevent sticking, you can also use silicone cupcake liners in your baking pan. Do not use paper liners. It’s hard to remove the baked muffins from them.
  4. Fill the cupcakes 3/4 to prevent overflow because the egg muffins puff up while baking.
  5. Once baked, let the muffins cool down in the tray for about 10 minutes before trying to remove them.
final product bacon keto breakfast bacon egg muffin
final product bacon keto breakfast bacon egg muffin

Are Eggs Keto?

Eggs are super nutritious and contain almost every nutrient that we need in our diet. They are high in:

  • Vitamin A
  • Folate
  • Selenium
  • Vitamin B5
  • Vitamin B12
  • Phosphorus.

Get creative and share with me your creations. I would be thrilled to feature your beautiful pictures on my Instagram page. Tag @lowcarbspark or #lowcarbspark!

More Keto Breakfast Recipes:

final product bacon keto breakfast bacon egg muffin

Keto Bacon Breakfast Egg Muffins

3.72 from 89 votes

Prep time 20 mins
Cook Time 30 mins
Yelds 6 egg muffins


These keto breakfast muffins are incredibly easy to make and can be made with foods that you already have at home. Mix some eggs, bacon, and veggies of choice. Season with your favorite spices bake and voilà you have amazing breakfast muffins that you can actually eat at every moment of the day.
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  • 5 large eggs
  • 3.5 ounce Bacon
  • 2 tbsp Green Onion
  • 1 oz Emmentaler or Mozzarella, shredded
  • 2 tbsp shredded Parmesan Cheese
  • 1 tsp Himalayan Salt
  • 1 tsp paprika powder
  • 1/2 tsp pepper


  • Preheat the oven to 350°F/180°C and grease a muffin tin with some butter or spray with non-stick spray. Set aside.
  • Crack the eggs into a mixing bowl, season with a pinch of salt and black pepper. Whisk together with a fork until fluffy.
  • Add the cooked bacon, shredded cheese and green onion to the egg mixture and whisk again.
  • Evenly pour the egg mixture into the muffin cups.
  • Bake the muffins in the preheated oven for 20-25 minutes.
  • Serve them hot or cold with butter on top.
Nutrition Facts
Amount per serving.
Total Carbs
Net Carbs

How do we calculate the nutrition info?

These nutrition facts listed are determined using nutrition information from the USDA Food Database. Our nutrition facts are accurate, but if you are using different products, please make your calculations. Net carb count is calculated by subtracting both fiber and sugar alcohols because they don’t raise blood sugar.

Course keto breakfast
Cuisine American
Keyword egg muffins, keto breakfast egg muffins
Tried this recipe?Mention @LowCarbSpark or tag #LowCarbSpark!
Breakfast Keto Egg Muffins - Perfect Macros & Low in Carbs


The full recipe is in the recipe card below. Readers that love this aslo made these recipes:


Ioana is a food and travel lover. Her greatest passion is developing mouthwatering recipes that are comforting, easy to make, and budget friendly! She firmly believes that cooking should be fun! About me...

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Recipe Rating

  1. How many muffins does this recipe make? I need to know if I need to double it!! Looks really good! Thanks!

  2. I just made this. Didn't have green onions, but I doubled it and added jalapenos to my fiancees half. They were amazing! Thanks for the easy recipe.

  3. Can you make these in advance & refrigerated? If so, how long are they good for stored in the frig? Can you freeze them & how long will they be good if frozen?

    1. Sure, you can make these in advance. They last for up to 5 days in the fridge and up to one month in the freezer!

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Hello! My name is Ioana Borcea, and I'm here to provide you with mouthwatering recipes. This blog is all about sharing my favorite tested easy to make, delicious low-carb & keto, nutrient-dense recipes.

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